Hp XC System 3.x Software User Manual download pdf (Page 122)

If myjob runs on an HP XC host, the SLURM[nodes=4-4] allocation option is applied. If it runs on

an Alpha/AXP host, the SLURM option is ignored.

• Run myjob on any host type, and apply allocation options appropriately:

$ bsub-n 8 -R "type==any" \

-ext "SLURM[nodes=4-4];RMS[ptile=2]" myjob

If myjob runs on an HP XC host, the SLURM[nodes=4-4] option is applied. If myjob runs on an

HP AlphaServer SC host, the RMS ptile option is applied. If it runs on any other host type, the

SLURM and RMS options are ignored.

122 Examples

1 2 ... 117 118 119 120 121 122 123 124 125 126 127 ... 132 133

HP XC System Software 1
User's Guide 1
Table of Contents 3
4 Table of Contents 4
Table of Contents 5 5
6 Table of Contents 6
List of Figures 7
List of Examples 11
About This Document 13
14 About This Document 14
5 Related information 15
16 About This Document 16
Linux Web Sites 17 17
6 Manpages 18
7 HP Encourages Your Comments 18
1.1 System Architecture 19
1.1.4 Node Specialization 20
1.1.5 Storage and I/O 21
1.1.6 File System 21
1.3 User Environment 23
1.5 Run-Time Environment 24
1.5.3 Standard LSF 25
1.5.5 HP-MPI 26
2 Using the System 27
2.2.1 Introduction 28
30 Using the System 30
3.1 Overview of Modules 31
3.2 Supplied Modulefiles 32
3.6 Loading a Modulefile 34
3.7 Unloading a Modulefile 34
3.9 Modulefile Conflicts 35
3.10 Creating a Modulefile 35
4 Developing Applications 37
4.4 Interrupting a Job 38
4.5 Setting Debugging Options 39
4.7.1.1 Modulefiles 40
4.7.1.2 HP-MPI 40
4.7.1.3 OpenMP 40
4.7.1.4 Pthreads 40
42 Developing Applications 42
4.8 Developing Libraries 43
44 Developing Applications 44
4.8 Developing Libraries 45 45
5 Submitting Jobs 47
48 Submitting Jobs 48
5.3 Submitting a Parallel Job 49
50 Submitting Jobs 50
52 Submitting Jobs 52
54 Submitting Jobs 54
56 Submitting Jobs 56
6 Debugging Applications 57
6.2.1.1 SSH and TotalView 58
6.2.1.2 Setting Up TotalView 58
60 Debugging Applications 60
6.2.1.8 Exiting TotalView 61
7 Monitoring Node Activity 63
64 Monitoring Node Activity 64
66 Monitoring Node Activity 66
68 Monitoring Node Activity 68
70 Monitoring Node Activity 70
8 Tuning Applications 73
74 Tuning Applications 74
8.2.1 Installation Kit 75
Running a Program 76
9 Using SLURM 79
9.3.1.1 The srun Roles 80
9.3.1.2 The srun Modes 80
9.7 Job Accounting 81
9.9 Security 82
9.8 Fault Tolerance 82
10 Using LSF-HPC 83
84 Using LSF-HPC 84
10.4 Job Terminology 86
10.5.1 Useful Commands 87
10.5.3 Preemption 87
10.6 Submitting Jobs 88
SLURM_JOBID=53 89
SLURM_NPROCS=4 89
90 Using LSF-HPC 90
92 Using LSF-HPC 92
94 Using LSF-HPC 94
96 Using LSF-HPC 96
98 Using LSF-HPC 98
100 Using LSF-HPC 100
102 Using LSF-HPC 102
11 Advanced Topics 103
104 Advanced Topics 104
106 Advanced Topics 106
11.3.1 Example Procedure 1 107
11.3.3 Example Procedure 3 108
11.3.2 Example Procedure 2 108
11.5.1 Shared File View 109
11.5.2 Private File View 109
110 Advanced Topics 110
A Examples 113
Submit the job: 114
View the job: 115
116 Examples 116
Exit from the shell: 117
Show the environment: 117
Display the script: 118
Run the job: 118
Submit the job: 119 119
View the finished jobs: 120
View the node state: 120
View the running job: 121
View the finished job: 121
122 Examples 122
Glossary 123
124 Glossary 124
126 Glossary 126
130 Index 130
132 Index 132

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